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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015935134.1_cds_XP_016481067.1_72440
CDS Infomation

[gene=LOC107802133] [db_xref=GeneID:107802133] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016481067.1] [location=complement(join(40331..40832,41605..41686,42099..42306,42868..42912,43341..43508,44091..44519))] [gbkey=CDS]
Sequence

ATGGAGATACTTCGCTTGTTATGGGTTACTATTATGTTGTTATTCTTTAGTCATTTAATC
AATGTAGAAGGAAGACATCATCTTTCCAAGAAACCAAAGAGCAAAAATATTAGTTATGTT
CCTAGTCCTGTTGATGTTCATGTTGATGAGCAACCACCAGCTGCATCTCCTGTTAGTACT
ATTGTTCCGTCAGACCCGAGTTACGGAGGTCCTGCTGGCTCGACTAATTCAGATTCTGGT
TGCGTTTTTGACGTGACAGAGTATGGAGCCATAGGAGATGGCTCAACGGATGACACTGAT
GCATTCAGAGCTGCTTGGAAAGAAGCATGTCAAGTTGAATCAGCTGTGGTTTTGGCTCCT
GCTGACCATGTTTTTATGATCACTTCTACCATTTTCTCTGGCCCTTGCAAACCTGGACTT
GAATTTCAAGTAAATGGGATCTTAATGCCACCAGATGGACCAGATTGTTGGCCAAAAAAA
GATAGTAACAAACAATGGCTTGTGTTTTACCGACTTGATAATATGACTTTCACCAGCACT
GGTACTATTGAAGGTAATGGTGAAAAATGGTGGGAATTACCTTGCAAACCTCACAGGGGA
CCTAATGGCTCAACTTTACCTGGACCATGTGATAGCCCTGCTATGATAAGGTTTTTCATG
AGCTCCAATTTGGTGGTGAGAGGTTTAAGAATACAAAACAGTCCAATGTTCCACATGAAA
TTTGATGGGTGTGAAGGAGTATTAATTGACCAATTGTCAATTTCTTCCCCTAAACTTAGC
CCAAACACTGATGGAATTCACATTGAGAACACCAAATCTGTTGGAATCTACAACTCCGTT
ATAGCCAATGGCGACGATTGTATATCAATTGGACCTGGTAGTTCAAACGTTGATATTGAA
GCCGTCACATGTGGGCCCAGTCACGGGATCAGCATTGGGAGCCTAGGGGTGCACCATAGC
CAGGCATGTGTCTCAAACATAACAGTCCGGAACACCATAATACGAGAGTCAGACAACGGA
GTAAGAATAAAAACATGGCAAGGAGGGTCAGGATCAGTAACAGGATTATCATTCGACACA
ATTCAAATGGAAAATGTGCGCAACTGCATAATCATAGACCAATATTACTGCATGACAAAA
GGCTGTCAAAACGAAACATCTGCAGTTTGTGTTAAAGACATCTCGTACAGGAACATTAAA
GGAACTTATGATGTTAGAAGTGCTCCTATTCATTTTGCCTGCAGTGATACCATTGCCTGT
ACTAATATTACAATGTCTGAAGTTGAACTACTTCCACATGAAGGCGAGCTTGTCGATGAT
CCTTTCTGTTGGAACGCTTATGGAATTCAACAGACGTTAACGATACCTCCAATTGATTGT
TTACAAGATGGAATGCCTCAGTCAATTGGTGAGGATGCATATACTTGCAGCTGA

Peptide Sequence

PEP ID

XP_016481067.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MEILRLLWVTIMLLFFSHLINVEGRHHLSKKPKSKNISYVPSPVDVHVDEQPPAASPVST
IVPSDPSYGGPAGSTNSDSGCVFDVTEYGAIGDGSTDDTDAFRAAWKEACQVESAVVLAP
ADHVFMITSTIFSGPCKPGLEFQVNGILMPPDGPDCWPKKDSNKQWLVFYRLDNMTFTST
GTIEGNGEKWWELPCKPHRGPNGSTLPGPCDSPAMIRFFMSSNLVVRGLRIQNSPMFHMK
FDGCEGVLIDQLSISSPKLSPNTDGIHIENTKSVGIYNSVIANGDDCISIGPGSSNVDIE
AVTCGPSHGISIGSLGVHHSQACVSNITVRNTIIRESDNGVRIKTWQGGSGSVTGLSFDT
IQMENVRNCIIIDQYYCMTKGCQNETSAVCVKDISYRNIKGTYDVRSAPIHFACSDTIAC
TNITMSEVELLPHEGELVDDPFCWNAYGIQQTLTIPPIDCLQDGMPQSIGEDAYTCS

Transcript Sequence

Gene sequence data has not been registered.